GgaEX6046386 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBZ5]
Coordinates
chr9:15119688-15122114:-
Coord C1 exon
chr9:15121938-15122114
Coord A exon
chr9:15120828-15120969
Coord C2 exon
chr9:15119688-15119875
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTTTTATCGTAATCTACAGTCT
3' ss Score
7.26
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTATGAAATCCTCCCCTGGCTGATGTGCCGTCTCCCTGGTCCTCATAAGAAAGTGTTGTCTTGCTATGATGTCCTGAGTTCGTTTTCGAGGATGGAGGTCAGAAGACACGTGGAGAGAGGGACACCAGATGAACCACAGGATTTCATTGACTTTTATCTGGCTGAGATAGAGAAA
Seq A exon
TCTAAAGATGAGGACAAGCCCAAGTATGATGAAGACAACTTGGTGCATGTTATAAACGATCTTTTCCTCGGTGGATCAGAGACCTCAAGCACAACCTTGTACTGGGGACTGCTCTATATGGTAGTCTATCCAGATATCCAAG
Seq C2 exon
AGAAAGTGCAGAAGGAGCTGGATACTGTTTTGGATCCCTCCCAGACGATCTGCTATGAGCATCGGAAAAAGCTGCCCTATACGAATGCTGTGATTCATGAGATCCAGCGCTTCAGCAACATTGTCTTTGTTGGTCTGCCCAGGGTGTGTGTGAGGAACACGACATTGCTGGGTTATCCTGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008069-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACACGTGGAGAGAGGG
R:
CCAGCAATGTCGTGTTCCTCA
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]