MmuEX1012576 @ mm10
Exon Skipping
Gene
ENSMUSG00000098867 | Gm27463
Description
predicted gene, 27463 [Source:MGI Symbol;Acc:MGI:5530845]
Coordinates
chr15:82638575-82639441:-
Coord C1 exon
chr15:82639265-82639441
Coord A exon
chr15:82638984-82639125
Coord C2 exon
chr15:82638575-82638763
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCTGTGTCCTAGGCA
3' ss Score
10.31
5' ss Seq
AGCGTGAGA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GTTCTGAACACATTTCCAATTCTCCTGCACATCCCAGGGTTGGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCCTGGTAAATAAGCTGGTGACTGAGCACAAGAGGACCTGGGACCCTGACCAGCCACCTCGTGACCTGACTGATGCCTTTCTGGCTGAAATGGAGAAG
Seq A exon
GCAAAGGGGAACCCTAAGAGTAGCTTCAATGAAGCAAATCTACGTCTGGTTGTCTTTGACCTGTTTGGTGCTGGGATTGTGACCAGTTCAATCACTCTGACCTGGGCCCTGCTGCTCATGATCTTGCATCCAGATGTGCAGC
Seq C2 exon
GCCGAGTGCAAGAGGAAATCGACGAGGTCATAGGGCAGGTGCGGTGTCCAGAGATGGCAGACCAGGCCCACATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCAGACATTGTCCCAATGAACTTGCCACACAAGACTTCTCATGATATTGGAAGTACAGGGCTTCCTTATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098867_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAAAGTCTTCCCTGGGC
R:
AAAGCGCTGCACCTCATGAAT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types