RnoEX0025877 @ rn6
Exon Skipping
Gene
ENSRNOG00000029179 | Cyp2d1
Description
cytochrome P450, family 2, subfamily d, polypeptide 1 [Source:RGD Symbol;Acc:708427]
Coordinates
chr7:123635320-123636181:-
Coord C1 exon
chr7:123636005-123636181
Coord A exon
chr7:123635724-123635865
Coord C2 exon
chr7:123635320-123635507
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTCATTCTGGCCCAGGCC
3' ss Score
6.27
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GTTTTGAACATGTTCCCAGTTCTCCTGCGCATCCCAGGGTTAGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCATGGTGGATAACCTGGTGACTGAGCACAAGAAGACTTGGGACCCTGACCAGCCACCTCGAGACCTGACTGATGCCTTTCTGGCTGAGATAGAGAAG
Seq A exon
GCCAAGGGGAACCCTGAGAGTAGTTTCAATGATGCAAATCTACGTCTGGTGGTCAATGACCTGTTTGGTGCTGGGATGGTGACTACTTCTATCACTCTAACCTGGGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGT
Seq C2 exon
GCCGAGTACAACAGGAAATCGATGAGGTCATAGGGCAGGTGCGGCATCCAGAGATGGCAGACCAGGCCCACATGCCGTTCACCAATGCTGTCATCCATGAGGTGCAGCGCTTTGCAGACATTGTCCCAATGAATTTGCCACACAAGACTTCTCGTGACATTGAAGTGCAGGGCTTCCTTATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029179-'9-6,'9-5,10-6
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACTTGGGACCCTGACC
R:
AGGAAGCCCTGCACTTCAATG
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]