MmuEX6055217 @ mm10
Exon Skipping
Gene
ENSMUSG00000094559 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82617105-82617632:-
Coord C1 exon
chr15:82617456-82617632
Coord A exon
chr15:82617223-82617273
Coord C2 exon
chr15:82617105-82617200
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTGCCTGGCCCAGGCC
3' ss Score
6.23
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTCTTAACACGTTCCCAATACTCCTGCGAATCCCAGGGCTGGCTGACATGGTCTTCCAAAGTCAGAAGACCTTCATGGCCATACTGGATAACCTAGTTACTGAGAATAGGACCACCTGGGACCCTGACCAGCCACCCCGAAATTTGGCCGATGCCTTCCTAGCAGAGATACAGAAG
Seq A exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGTGCATGGTG
Seq C2 exon
GGATGGTGACCACCTCAACCACACTGTCCTGTGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGCGTGAGCCTGGCTGGGGCTGGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094559-'7-9,'7-8,8-9
Average complexity
C1
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAAGACCTTCATGGCCA
R:
CAGTGTGGTTGAGGTGGTCAC
Band lengths:
142-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types