RnoEX0025890 @ rn6
Exon Skipping
Gene
ENSRNOG00000032261 | Cyp2d4
Description
cytochrome P450, family 2, subfamily d, polypeptide 4 [Source:RGD Symbol;Acc:620640]
Coordinates
chr7:123600187-123601097:-
Coord C1 exon
chr7:123600921-123601097
Coord A exon
chr7:123600596-123600737
Coord C2 exon
chr7:123600187-123600374
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCTGCCTGGCCAGGCC
3' ss Score
8.44
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
Exon sequences
Seq C1 exon
CTCCTGAATGTGTTCCCGATGCTCCTACACATCCCAGGGCTTCTTGGCAAGGTATTCTCTGGAAAGAAGGCCTTCGTTGCCATGCTGGACGAGCTGCTAACTGAACACAAGGTGACCTGGGACCCTGCGCAGCCACCCCGAGATCTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
Seq A exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGCGTGTGGTGGTGGCTGACCTGTTCATGGCGGGGATGGTGACCACCTCCACCACACTGACCTGGGCCCTGCTGTTCATGATCCTGCGTCCAGATGTGCAGT
Seq C2 exon
GCCGAGTACAACAGGAAATCGATGAGGTCATAGGGCAGGTGCGGCGTCCAGAGATGGCAGACCAGGCACGAATGCCGTTCACCAATGCTGTCATCCATGAGGTGCAGCGCTTTGCAGACATTCTCCCTCTTGGTGTGCCTCACAAGACTTCTCGTGACATTGAAGTGCAGGGCTTCCTTATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032261_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACACAAGGTGACCTGGG
R:
AGGAAGCCCTGCACTTCAATG
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]