MmuEX0013343 @ mm10
Exon Skipping
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82372390-82373287:-
Coord C1 exon
chr15:82373111-82373287
Coord A exon
chr15:82372785-82372926
Coord C2 exon
chr15:82372390-82372577
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTGCCTGGCCCAGGCC
3' ss Score
6.21
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
TTCCTGAATGTGTTCCCGATGCTCCTGCGCATCCCGGGGCTGGTTGGCAAGGTCTTCCCTGGGAAAAGGGCCTTTGTTACCATGTTGGATGAGCTGCTGGCTGAACACAAGACGACCTGGGACCCTACCCAGCCACCCCGAGATTTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
Seq A exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCACGGTAGTGGGTGACCTGTTCTCTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGATGCTCATGATCCTGCATCCAGATGTGCAGC
Seq C2 exon
GCCGAGTACAACAGGAAATCGATGAAGTCATAGGGCAGGTGCAGTGTCCAGAGATGGCAGACCAGGCTCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCAGACATTCTCCCTCTTGGTGTACCTCACAAGACTTCTCGTGACATTGAACTACAGGGCTTCCTTATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAAAAGGGCCTTTGTT
R:
AGGGAGAATGTCTGCAAAGCG
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types