MmuEX0013336 @ mm10
Exon Skipping
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39035445-39042693:+
Coord C1 exon
chr19:39035445-39035632
Coord A exon
chr19:39038100-39038241
Coord C2 exon
chr19:39042017-39042693
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTTTATCTGTTATTTTCAGGGC
3' ss Score
9.85
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG
Seq A exon
GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG
Seq C2 exon
GAAAGCGAATGTGCGTGGGAGAGGCCCTGGCTCGCACGGAGCTGTTTTTGATTCTGACCACCATTTTACAGAATTTTAACCTGAAATCTTTGGTTGATACAAAGGACATTGACACTACTCCAGTGGCCAATACTTTTGGCCGTGTACCACCTTCATACCAGCTGTACTTCATTCCTCGTTAAAGCAGAACACACTGGCTGTTGCTATGCTGGTATCTCTGACTTCTCAGGGAGCAGTCTCCATATCCTGTCAACTATTAGGGACATCTCTCTCACTACTCCTCTCACATCTTTTCATTCTCCCACAATCCAGTCATCATCCATCTTTGTTTAAGAAGATTTTCCAGAGTTACCATGCAGATCCATCCTCTGTCCTCTTCAGTCTACAACACTTATATCGACAGTACTAAGACATGTACTGTGTCACTAATATGTTAAAAGTGTAATACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGCAGCTACCTGTAATG
R:
ACAGCCAGTGTGTTCTGCTTT
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types