MmuEX0013376 @ mm10
Exon Skipping
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115519630-115521195:+
Coord C1 exon
chr4:115519630-115519774
Coord A exon
chr4:115520252-115520266
Coord C2 exon
chr4:115521068-115521195
Length
15 bp
Sequences
Splice sites
3' ss Seq
AGTCATTGTTTCCCTTTCAGATC
3' ss Score
10.26
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAGTTCAAAGGTGACCAAGAACTACAGGAAATTGTGTCGTGCATAGAGAACTTCCCAAGTGCCTTTCCTAGATGGTTCTGGGGAAGCAAGGCCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAG
Seq A exon
ATCCAAAGGCTAATG
Seq C2 exon
GGTATGGTTTGCTCTTGTTGAATGGACAGCCATGGTTCCAGCACAGGAGGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTGAAAAACATGGCCGACTCCATTCGATTGATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.6=100)
A:
PF0006717=p450=FE(1.1=100)
C2:
PF0006717=p450=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAAGTGATTCTGGGGCGA
R:
TCATAGTGGAAGGCTGGGGTT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types