MmuEX0013391 @ mm10
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:32932629-32941200:-
Coord C1 exon
chr17:32941056-32941200
Coord A exon
chr17:32938072-32938207
Coord C2 exon
chr17:32932629-32932682
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCGTCTTCTTTTTGAGACAGGAT
3' ss Score
3.09
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq A exon
GATTCCTCTATTGAAGCTCTGGCTGTCCTGGAGCTACTCAGTGTGTAAACCAGGGTGGCCTCGAACTCACAAAGATACACCTGCGTCTCACCCTTATCTGAGAAGCTGTGGGCACAATGTCTCACCCCTATCTGAG
Seq C2 exon
CTGCTGTTGCACCCAAGGAAATGACTCTCTATGGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX2-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NO
C2:
PF0006717=p450=FE(13.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAACGAGGAAAGCATGC
R:
CTTCAGGAAGCCATAGAGAGTCA
Band lengths:
186-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types