MmuEX0013390 @ mm10
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:32930541-32947003:-
Coord C1 exon
chr17:32946805-32947003
Coord A exon
chr17:32941056-32941200
Coord C2 exon
chr17:32930541-32930662
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCAGATTTCTCCTTTCCCAGATG
3' ss Score
6.45
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATGCTACAGCTATGTCTGTCCTGGCTGGGAATGGGGTCCCTGACTGCCTCTCCGTGGCATCTACTGCTGCTGGGAGGGGCATCTTGGATTCTAGCCCGAATTCTGGCCTGGATCTATGCCTTCTATGACAACTGCAGTCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCGAGCTGGTTCTGGGGTCACTTGGCCTTG
Seq A exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq C2 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX2-2/5=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(10.6=21.2)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=FE(12.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGCATCTTGGATTCT
R:
GCAGTTGCTGTCGACACTGAA
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types