MmuINT0045365 @ mm10
Intron Retention
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:32930541-32932540:-
Coord C1 exon
chr17:32932413-32932540
Coord A exon
chr17:32930663-32932412
Coord C2 exon
chr17:32930541-32930662
Length
1750 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TATACCACTTCTCTGGCCAGGCT
3' ss Score
5.93
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGATGAGTGCTGGTGACAAGTGGAGCCACCACCGACGCCTGCTGACACCTGCCTTTCACTTTGACATCCTGAAGTCCTATGTGAAGATTTTTAACAAGAGTGTGAACATCATGCAT
Seq A exon
GTGAGTTTCTGGAACCCAGGGCCCCACTGGAGCCTTGTAGAAAGGGACGTGGTTTCAGATGTAATCAGCAGATGTGGGTCTGCTAAGATGCCTTTGGGACCACAGGGGCCTCCTCTCCCAGCCTTAGCTTTGCTTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCTGTGTCTCTCTCTGTCTCTCTCTCTCCCTCCCTCCTTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTGTCTGTCTCTCTCTTTCTGTCTTTCACCTTTTTTGAGACAGCGTTTCTATGTGTAGCCCTGGCTATCCTGTACCATGCTTAGTAGACCAAGTTGGCCTCAAATTCAGAGATCTGCCTGTTTCTGCCTCCCAAGTGCTAGTATTAAAGGCATGTGCCACCACCACTCTGCAATTTTCTGTCTGTAAAGTGGGAATAATAATCTATACTTAAGCATAGATGAGATAACACATGGAGCCATGCTCCTACATACAGAGAGAGCTCAGAGGATGTGTTTCTGTTCTTGGTCACAGGAGCTTTGGAAAGTCAGCACACATTAACGCTGTCTGCTGCAAGTAGTGCTGTTTACACCACACCACTTTACACTCACTTGTCTTAAGCTCTGCATGGTGAGCGGTACCTTTGATCCCCCCACTTAGCAGATGAAGCAGAAGTACAGTGAGTTCATAGCTACACAGCAAGACCCTGTCTCAAACAAGCAAGGTCTCTGGTGTAGCTTGGTGCTAGAAAGCCTGCTTAGCATGCGCAAGCCCTGGCTCCTACCCATCACTAAAAACAAAAGAAAGGGGCTGCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTCTTGTCTTGTCCTGGAACTCACTATGACACAGTGACTGTGGAGACCAGTCTGGCCTCCAACTCAGAGAGATCCACCTGTCCCTGATGAGATTAAAGGCATACTACACCATGACTAGCTAAGAAAAGTAGTTGTGTTTTTTTTTTTTTTTTTTTTTTTAAAGAAAAAAATAACATCACTGGCTTTGGTGGGCCAGCTAGATCCATCCTGGCTTTTTTTCTTCCTTGAGAGAGTCTGGGTTTCCTAGCATGGAGAGACCTGGGAGAGGGGGAGGGGGAGGGGGCGGGGGACAGGGGACAGGGACGGAGACAGAGACAGAGACGGAAACAGAGATGGAGATGGAGTCAGAGAGACAGACAGACAGGCACAGACAGAGAACAGAGAGACACAGAGAATGTCAGGGTGAGCAGAAACTGAGGGTCAGAGAGGTCAGAGAGTGTGTCAAACTTCACCAGCAGTAAGAGAGTATAAGTAGTGTATAAGTAAGTATAAATATAAGTAGTGAAGCAAATATTTAAGTATGGTTGTGGAGCAAAAAAATCAGATCAACTTAGTTATTTTTAAAAGTTGAAGAGGTGGGACTGAGAAGAAGACAGTGAGCTGAACAGAGAAGGTGGACTTGAACCCAGCGCTCCTGCCTCCCCACCTTGCATGTTAGACTCCTATGATAACACGTCTGTGCTCACTCAAGTGTGGCTTACCCTGGGTGCAGTGCTTAGGGCAGAGCACCAGAAGGTTGGCTCTGAGCAGGGTAGGAGTATTCTGGTGTTTGGAGTGCAGTGATGCAAAGAAGGCCAGACTCAGCCCAATCTTATACCACTTCTCTGGCCAG
Seq C2 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055:ENSMUST00000075253:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.0=100)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGCTCCTGATGAGTGCT
R:
TCTTGGCAGTTGCTGTCGAC
Band lengths:
248-1998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types