RnoINT0044622 @ rn6
Intron Retention
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15207699-15209711:-
Coord C1 exon
chr7:15209584-15209711
Coord A exon
chr7:15207821-15209583
Coord C2 exon
chr7:15207699-15207820
Length
1763 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CATACCACTTCTCTGGCCAGGCC
3' ss Score
6.74
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGATGAGCGCTGGTGAGAAGTGGAACCACCACCGACGCCTGCTGACACCCGCCTTCCACTTTGACATCCTGAAGTCCTACGTGAAGATTTTTAACAAGAGCGTGAACACCATGCAT
Seq A exon
GTGAGTGTCTGGAACACATGGCCCCTTGTAGAAAGGGATGTGGTTTCAGATGTATTCTGCAGGTGTGGGTCTGCTAAGATACCTTTGGGGTCACAGGTTTCCCTCTCCAAGCCCCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGTCACTTTTTGGTTTTTTTTGAGATAGTGTTTCTCTGTGTAGCCCTGTCTGTCCTTGAACTTGCTTTGTAGACCAGGTTGGCTCAAACTCAGAGATCTACCTGCTTCTGCCTCCCAAGTGCTACTATTAAAGTGTGCGCCACCACCAGCAGCAATTTTCTAACTGAGAAGTGGGAATAATAATCTATACATAGGCGTAGAAGAGGTGACACCGTGGGGTCATGCTCCTAGCAGACAGAGGGGGCTCAGAAGGATCTGTTTCTGTTCTTGGTGGCAGAAGCTTCGGAAAGTCAGCACACATCAACGTTATCTGTTGCACAGTACCTGTCCACACACCACACCACTTACAACACACTGGCTCTGCATGGTGGGTGGTACCTTTGACCCCAGCACTTGTCAGCTGAAGCAGAAGTACAGTGTGAGTTCATGTCTACACAACAAGACCCTGTCTCAAACAAACAAGATCTCGGGTGTAGCTCAATGCTAGAGAAGCTGCTTAGCACGCACAAGCCCTGGCTCCGATTGCACAACTAAAGGCAAAAGAAAGGGGGTTGTTGTTGTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTCCTGGAACTCACTATGACACAGTGACTATGTAGACCAGGCTGGCCTCTAACTCAGAGAGATCCTCCTGTCCCTGTTGAGATTAAAGGCATTCAACACCACAAATAGCTAAGAAAAGTTGTTTTTCAAAAAGAAAAGAATAACATCACTGGCCTTGGTGGGCCAGCTAGATCCATCCTGGCTTTTTATCCTCCTTGAGAGAGTTTGGGTTTCCTAGCATGGAAAGACTGGGGAGAGAAAGAGAGAGAGAGGGAGAGAGCGAGGGGGAGGGGAGAGGGAGAGGGAGGGAGGGGGAGGGAGGGAGCAGAAAAACAGTCTTTCCAAGTTTGGCTTCAGAAATAGCACACTATTATGTCTATACTCCTTAGGTCAGAACAAATAAGTCTCTAGTTCATCTCAGATTCACATCATGGAGAAACAGGCCTACCTCCCAATGGAGAGAGCTGCAAAGGCTCATTGAAAAGCCTGGGGATAGAGGAAGTGTGGACAACTGTATCACTATTCTAACAGGGATAGTAAAGACACCAGACTTGTACTGATCTGCTACTATAGGCAGAGATATTATGATGATTCTACGATATAAATTGTCTGTTGTAATTTCCACACTGCTCTAAGACAGAGATGACTGTGACTTCTAGATTATGGATTGTGAAACTGAGGGCCAGAGAGGTCAGGGAGTGTGTCAAAATTCACCAGCAGTAAGAGAGTATACGTAGTGAAGCAAATATTTAAGTATGGCTGTGGAGCAAATAAAATCAGAACAACTTAATTATTACTATAGGTTTAAGAGGTGGGACTGAGTAGAAGACAGTGAGCTGAACAGACCTGCATTGCCTGATAACACCTCTGTGCTCACCCATGACCGCCCTACCCTGGGTGCAGTGCTTGGGGCAGAGCACCAGAAGGTTGCCTCTGAGCAGGGTAAACGACTATTCGTTTGGACTTATGCAGTGGTGCAAGGAAACCAGATTCAGCCCAATCTCATACCACTTCTCTGGCCAG
Seq C2 exon
GCCAAGTGGCAGCGTCTGACTGCCAAGGGCAGTGCCCGTCTGGACATGTTCGAGCACATCAGCCTGATGACCTTGGACAGCCTGCAAAAATGCATCTTCAGCTTCGACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233:ENSRNOT00000066095:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(27.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGGCTCCTGATGAG
R:
CTGTCGAAGCTGAAGATGCAT
Band lengths:
238-2001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]