MmuEX0013389 @ mm10
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:32941056-32947402:-
Coord C1 exon
chr17:32947313-32947402
Coord A exon
chr17:32946805-32947003
Coord C2 exon
chr17:32941056-32941200
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTATTTGCCCTGCAGGAT
3' ss Score
11.16
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTTCCGGGACAAAATGTTTTCAGAGAAGACAGGAAGTTGTGGAAGATTCGCTGCTCGTGAGAGAAGGTGCCGGGGTGGAAGGCAACAAG
Seq A exon
GATGCTACAGCTATGTCTGTCCTGGCTGGGAATGGGGTCCCTGACTGCCTCTCCGTGGCATCTACTGCTGCTGGGAGGGGCATCTTGGATTCTAGCCCGAATTCTGGCCTGGATCTATGCCTTCTATGACAACTGCAGTCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCGAGCTGGTTCTGGGGTCACTTGGCCTTG
Seq C2 exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX2-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(10.6=21.2)
C2:
PF0006717=p450=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGGGACAAAATGTTTTCA
R:
TTGGAGCAGGGGAGCAATGAA
Band lengths:
228-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types