Special

MmuEX0013389 @ mm9

Exon Skipping

Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:33078001-33084347:-
Coord C1 exon
chr17:33084258-33084347
Coord A exon
chr17:33083750-33083948
Coord C2 exon
chr17:33078001-33078145
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTATTTGCCCTGCAGGAT
3' ss Score
11.16
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTTCCGGGACAAAATGTTTTCAGAGAAGACAGGAAGTTGTGGAAGATTCGCTGCTCGTGAGAGAAGGTGCCGGGGTGGAAGGCAACAAG
Seq A exon
GATGCTACAGCTATGTCTGTCCTGGCTGGGAATGGGGTCCCTGACTGCCTCTCCGTGGCATCTACTGCTGCTGGGAGGGGCATCTTGGATTCTAGCCCGAATTCTGGCCTGGATCTATGCCTTCTATGACAACTGCAGTCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCGAGCTGGTTCTGGGGTCACTTGGCCTTG
Seq C2 exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.031
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
PF0006717=p450=PU(21.9=21.2)

							
C2:
PF0006717=p450=FE(10.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000074733





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000074733f1463A, ENSMUSP00000117168, ENSMUSP00000118919, ENSMUSP00000123495
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:15674883-15675081 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:8615685-8615912 
HIGH PSI
BtaEX6037218
(CYP4F3)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTTCCGGGACAAAATGTTTTCA

				
R: 
TTGGAGCAGGGGAGCAATGAA

				
Band lengths: 
228-427

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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