BtaEX6037218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8607527-8616384:-
Coord C1 exon
chr7:8616331-8616384
Coord A exon
chr7:8615685-8615912
Coord C2 exon
chr7:8607527-8607671
Length
228 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTCCTTTATCCTCAGGAC
3' ss Score
11.24
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCCCAGAAGGAGGACAGAGGAAGTTGTGTGGGACAAGCTGCTCCTGACCGAAG
Seq A exon
GACTCACCCTCCACCCCATCTGACCACAGGATGCTGGAGCTGAGCCTGTCCTGGCTGGGACTCGGGCCGGTGGCAGCCTCCCCGTGGCTGCTGCTGCTGCTGGTCGGGGCCTCCTGGATCCTGGCCCGCATCCTGGCCTGGATCTACGCCTTCTATGACAACTGCTGTCGCCTCCGATGTTTCCCGCAGCCCCCCAAACGGAGCTGGTTTTGGGGTCACCTCGGCCTG
Seq C2 exon
GCACAGAGCAATGAGGAGAGCATGCGGCTGGTGGAGGAGCTGGGCCACTACTTCCGCGACGTCCACCTCTGGTGGATGGGGCCCTTCTTCCCCATCCTGCGGCTTGTTCACCCTAACTTCGTTGCCCCTCTGCTCCAGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAAGGAGGACAGAGGA
R:
GAGCAGAGGGGCAACGAAG
Band lengths:
188-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]