MmuEX6076819 @ mm10
Exon Skipping
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32506462-32518038:+
Coord C1 exon
chr17:32506462-32506578
Coord A exon
chr17:32506894-32507092
Coord C2 exon
chr17:32517894-32518038
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTATCTTTCTTGCAGGAT
3' ss Score
11.33
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGGGCCACCGAGGGATTGGCTCAGTCCAGCTCATCGTCCTGCTCAGCCGGTAGCCAGGATCAAAAACATTTCCAGGGAAGAGCGGACGTTTCTGGGACGCATTACTCCTGAGAAAAG
Seq A exon
GATGCTACAGCTGGGCCTGTCCTGGCTGGGACTGGGGCCTGGAGCTGCCTTCCCATGGCAACTTCTGCAGTTGGTTGGGGCCTCCTTGTTCCTGGCTCGAATTCTGACCTGGATTTGTGCCTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCCGAGCCCCCTTCGCGGCACTGGTTTTGGGGTCACATGAGCATG
Seq C2 exon
GTCAAGAACAACGAGGAAGGCCTGCAGTTGTTGACTGAAAGGAGCCACCAATTCCATGATGTCCACCTCTGTTGGATTGGGCCCTTCTACCCCATCCTGAGGCTTATCCACCCCAAGTTTATTGGCCCCATACTCCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586-'4-5,'4-0,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(10.4=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCTCAGTCCAGCTCATC
R:
GCCTGGAGTATGGGGCCAATA
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types