MmuEX6076819 @ mm9
Exon Skipping
Gene
ENSMUSG00000091586 | CT485616.2
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32643407-32654983:+
Coord C1 exon
chr17:32643407-32643523
Coord A exon
chr17:32643839-32644037
Coord C2 exon
chr17:32654839-32654983
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTATCTTTCTTGCAGGAT
3' ss Score
11.33
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGGGCCACCGAGGGATTGGCTCAGTCCAGCTCATCGTCCTGCTCAGCCGGTAGCCAGGATCAAAAACATTTCCAGGGAAGAGCGGACGTTTCTGGGACGCATTACTCCTGAGAAAAG
Seq A exon
GATGCTACAGCTGGGCCTGTCCTGGCTGGGACTGGGGCCTGGAGCTGCCTTCCCATGGCAACTTCTGCAGTTGGTTGGGGCCTCCTTGTTCCTGGCTCGAATTCTGACCTGGATTTGTGCCTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCCGAGCCCCCTTCGCGGCACTGGTTTTGGGGTCACATGAGCATG
Seq C2 exon
GTCAAGAACAACGAGGAAGGCCTGCAGTTGTTGACTGAAAGGAGCCACCAATTCCATGATGTCCACCTCTGTTGGATTGGGCCCTTCTACCCCATCCTGAGGCTTATCCACCCCAAGTTTATTGGCCCCATACTCCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586-'0-4,'0-0,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCTCAGTCCAGCTCATC
R:
GCCTGGAGTATGGGGCCAATA
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: