MmuEX0013390 @ mm9
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:33067486-33083948:-
Coord C1 exon
chr17:33083750-33083948
Coord A exon
chr17:33078001-33078145
Coord C2 exon
chr17:33067486-33067607
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCAGATTTCTCCTTTCCCAGATG
3' ss Score
6.45
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATGCTACAGCTATGTCTGTCCTGGCTGGGAATGGGGTCCCTGACTGCCTCTCCGTGGCATCTACTGCTGCTGGGAGGGGCATCTTGGATTCTAGCCCGAATTCTGGCCTGGATCTATGCCTTCTATGACAACTGCAGTCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCGAGCTGGTTCTGGGGTCACTTGGCCTTG
Seq A exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq C2 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX1-2/5=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(21.9=21.2)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=FE(12.4=100),PF056518=Diacid_rec=FE(56.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGCATCTTGGATTCT
R:
GCAGTTGCTGTCGACACTGAA
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types