MmuEX0013392 @ mm9
Exon Skipping
Gene
ENSMUSG00000024055 | Cyp4f13
Description
cytochrome P450, family 4, subfamily f, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2158641]
Coordinates
chr17:33067486-33078145:-
Coord C1 exon
chr17:33078001-33078145
Coord A exon
chr17:33069574-33069627
Coord C2 exon
chr17:33067486-33067607
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCTTCTCTGTGTCAGCTG
3' ss Score
7.45
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGAAGAACAACGAGGAAAGCATGCAGTTCATAACACATCTGGGCCATGACTTCCATGATGTCCACCTCTCTTGGGTTGGACCTGTGTACCCAATCCTGCGACTCGTCCACCCGAACTTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq A exon
CTGCTGTTGCACCCAAGGAAATGACTCTCTATGGCTTCCTGAAGCCCTGGCTGG
Seq C2 exon
GCTAAGTGGCAGTGCCTGGCCTCCAAGGGCACTTCCCGTCTGGACATGTTTGAACACATCAGCCTCATGACCTTGGACAGCCTGCAGAAGTGCATCTTCAGTGTCGACAGCAACTGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024055_MULTIEX1-4/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(12.4=100),PF056518=Diacid_rec=FE(56.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTACCCAATCCTGCGAC
R:
TGTCCAAGGTCATGAGGCTGA
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: