RnoEX6030782 @ rn6
Exon Skipping
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15218961-15225410:-
Coord C1 exon
chr7:15225279-15225410
Coord A exon
chr7:15224737-15224935
Coord C2 exon
chr7:15218961-15219105
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTATTTGCCCCGCAGGAT
3' ss Score
10.97
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGAGGCTGGGAGCGATTGGCTGGTTCAGCCCAGCTCAACTTCCCGCACAGCTTCCGGCAAGTCGGAAGCCAGGGACAAAAAGTTTTCAAAGAAGATAGGAGGTTGTGGAGGACTCGCTGCTCATGAGAGAAG
Seq A exon
GATGCTACAACTAAGCCTGTCCCGGCTGGGAATGGGGTCCCTGACAGCCTCTCCATGGCATCTACTGCTGCTGGGAGGAGCCTCTTGGATACTAGCCCGAATTCTGGCCTGGATCTATACCTTCTATGACAACTGCTGCCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCAAGTTGGTTTTGGGGTCACTTGACCTTG
Seq C2 exon
ATGAAGAACAACGAGGAAGGCATGCAGTTCATAGCACATCTGGGCCGCAACTTCCGTGATATCCACCTCTCTTGGGTGGGACCCGTGTACCCGATCCTGCGACTCGTCCACCCTAACGTCATTGCTCCCCTGCTCCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233-'0-3,'0-0,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCCCAGCTCAACTTCC
R:
CAGGGGAGCAATGACGTTAGG
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]