RnoEX0026020 @ rn6
Exon Skipping
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15207699-15224935:-
Coord C1 exon
chr7:15224737-15224935
Coord A exon
chr7:15218961-15219105
Coord C2 exon
chr7:15207699-15207820
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCAGATTTCTCCTTTCCTAGATG
3' ss Score
6.01
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GATGCTACAACTAAGCCTGTCCCGGCTGGGAATGGGGTCCCTGACAGCCTCTCCATGGCATCTACTGCTGCTGGGAGGAGCCTCTTGGATACTAGCCCGAATTCTGGCCTGGATCTATACCTTCTATGACAACTGCTGCCGCCTTCGTTGCTTCCCTCAGCCCCCTAAACCAAGTTGGTTTTGGGGTCACTTGACCTTG
Seq A exon
ATGAAGAACAACGAGGAAGGCATGCAGTTCATAGCACATCTGGGCCGCAACTTCCGTGATATCCACCTCTCTTGGGTGGGACCCGTGTACCCGATCCTGCGACTCGTCCACCCTAACGTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq C2 exon
GCCAAGTGGCAGCGTCTGACTGCCAAGGGCAGTGCCCGTCTGGACATGTTCGAGCACATCAGCCTGATGACCTTGGACAGCCTGCAAAAATGCATCTTCAGCTTCGACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAACTAAGCCTGTCCCG
R:
TGTGCTCGAACATGTCCAGAC
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]