Special

MmuEX0013399 @ mm9

Exon Skipping

Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32829503-32834988:+
Coord C1 exon
chr17:32829503-32829630
Coord A exon
chr17:32832219-32832340
Coord C2 exon
chr17:32834718-32834988
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCTTTTTCTGCAAAGGCC
3' ss Score
7.88
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GGGATGGGCTCTTGCTGAGTGATGGTGACAAGTGGAGCAGCCACCGTCGCATGTTGACACCTGCTTTCCATTTCAACATCCTAAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATAATGCAT
Seq A exon
GCCAAGTGGCAGCACCTGGCCTCAGGTGGCAGCGCCCGTCTGGATGTGTTTGAGAACATCAGCCTCATGACCTTGGACAGCCTGCAGAAATGTGTCTTCAGTTTTGATAGCAACTGCCAGGA
Seq C2 exon
GAATCCCAGTGAGTATATTTCTGCCATCTTGGAGCTCAGTGCCTTAGTGACCAAACGGTACCACCAGCTGCTTCTACACATAGACTCACTCTATCAGCTCACCTGTAGTGGGCGGCGCTTCCACAAGGCCTGCCACCTGGTGCACAGCTTCACAGATGCTGTCATCCAGGATCGACGACGTACTCTCCCCAGTAAGCATGAGGATGATGTCCTCAAGGCCAAGGCTAAGTCCAAAACTCTGGATTTCATTGATGTGCTGCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(9.1=100)

							
A:
PF0006717=p450=FE(8.6=100)

							
C2:
PF0006717=p450=FE(19.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000129264





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000008801
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:15793199-15793320 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:8559086-8559207 
HIGH PSI
BtaEX0000933
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCGCATGTTGACACCTGCTTT

				
R: 
CAGCATCTGTGAAGCTGTGCA

				
Band lengths: 
243-365

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"