MmuEX0013405 @ mm9
Exon Skipping
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:74512959-74516860:-
Coord C1 exon
chr8:74516731-74516860
Coord A exon
chr8:74513606-74513670
Coord C2 exon
chr8:74512959-74513041
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCATTTCCCCCACAGGTG
3' ss Score
12.24
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GCCATGACACCACGGCCAGTGGACTTTCCTGGATCCTGTACAACCTGGCAAGACACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCGGGAGCTCCTGAGGGACCGCGAGCCTGAGGAGATTGAATG
Seq A exon
GTGTCATAAGCCGAATAAGTATTTTCGGGACACATCACAATCCAGCTGTGTGGCCAGACCCGGAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTTGATGCCGACAACGTCAAGGGCAGGTCACCCCTGGCTTTTATTCCCTTCTCGGCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTGTACAACCTGGCA
R:
GGGAATAAAAGCCAGGGGTGA
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: