MmuEX0014195 @ mm9
Exon Skipping
Gene
ENSMUSG00000001482 | Def8
Description
differentially expressed in FDCP 8 [Source:MGI Symbol;Acc:MGI:1346331]
Coordinates
chr8:125969998-125971812:+
Coord C1 exon
chr8:125969998-125970084
Coord A exon
chr8:125971217-125971263
Coord C2 exon
chr8:125971688-125971812
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTTTGGGTGTTTTGTTGTAGGGA
3' ss Score
8.57
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GACATAGTCACATTACCATGCCTAGGTGCAGGGCAGTCTGGGAAGTCACGTGACAAGAGTGATGCCCTCCTCATGCAGGGTGAAAGG
Seq A exon
GGAACATCTCAAGTAAGGGGACAGGAAGGAAGATCCAGTTCCAAGAG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGTTCGGTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGCTTGGTCCGAGGCATCATGAACAGGAACCCAGTGAGAAGGTCACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001482-'4-6,'4-4,8-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=1.000 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACAAGAGTGATGCCCTC
R:
CTGTTCATGATGCCTCGGACC
Band lengths:
136-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: