MmuEX0014260 @ mm10
Exon Skipping
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106492429-106495008:+
Coord C1 exon
chr3:106492429-106492577
Coord A exon
chr3:106493214-106494177
Coord C2 exon
chr3:106494831-106495008
Length
964 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATTTATTTATAGAAT
3' ss Score
6.95
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTCATCTCACTGACACGGCCCCTAGACTCCCACCTTGAACACGTGGACTTCAGTGTTCTGCTACACTGTCTCCATTTGGAGCAGATTATTCAGATCTTTGCCTCTGCAGTGCTGGAAAGAAAAATCATCTTTTTGGCAGAGGGTCTCAG
Seq A exon
AATGGAAATGATGTGGACGGTGCCTTATAGGGTTGTGATGGGGACTAAAGGTGATAACGCACAGTGGTAGACATCCTGGACTCCAACAGGTGCAGATTGGCGAGGACGAGCTACCAATCTCCACCAGTTCTCAGTTGAGCATATACCCGTGTGTAAGAGAAGCAGGAAGTTATAATGTGCCGGTTGCTGCTTTTGAGAAGATCTGAGTCCGAGAAAGGATGTGGAGAGACAAGTAGCAGGCAGAGAAGAGAAATTGATAAAACCAGTAAAAGATTGACTATGAAGCCCTGGCTGGCTTGGAACTCACAGATATCTGCTTGCCAATGAGCAGATCTACCTACTGAGTGCTGGGAGGTTTGAGCAACGTCAGCAAGAAGCTATAATTTTGAGCTAAGCCCTGGTACTCAGAAACAGAAACGGAAGTTGACAAACAACAAAGGATCAAGGGAATGACATGAGTTCCCAAAGAAAGGAAGCTTGGCCAGGGTTCAGGGGTCTGTGTGTTAAAGAATAATGCCATCATCAATAACCAAGAAGGAAACTATCATAGGCTAAATCTTGTAGGAAGGGGTATCATTTTTGTTTTGGAGGTGGTTCTTCTACTCTGGGCCCTGTGTGAAGGAAGTTTTTGTGGTAACTGGGACTCAGCTTTCAACTAGGTACTTCTGGTCAGTATTTAGGAAGTTTCAGGAACAAACTTTCTCCAGGAAATATTACAACTTCCTACTTTCTTCCCGCACAGTTTTCAGATCCTGGAGGCTGGAGCTGGGAAGGGGACTTCTGACCAGCCCAGTTTGTTAGGGAAGCACTCAGAGACTTTCTAACTCAGGAAGTGCTAGCTTGATACCAAGGTTTCCGCATCTGTGTTTTTATTGGCCTTGGGTGTGGGGTAATTTGGCTGGAGAAAAGCTTGAGAGCTAGTGGAGCATAGGAAAGCTGGAGACTGAGGCTGGCCACAGTTCGG
Seq C2 exon
TACCCTGTCTCAGTGTATCCATGCTGCTGCAGCTCTGCTTTACCCATTTAGTTGGGCACACACATACATCCCTGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGGTTGGGGTACAGATGCGCTTCCTGCAGGAGGTTATGGACAGTCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(26.5=100)
A:
PF0214116=DENN=PD(5.6=29.2)
C2:
PF0214116=DENN=FE(31.9=100)
Main Inclusion Isoform:
ENSMUST00000029508fB1271
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCTCACTGACACGGCCC
R:
CTCTTCCATGGGACTGTCCATA
Band lengths:
327-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types