MmuEX0014850 @ mm10
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:131119407-131121628:+
Coord C1 exon
chr7:131119407-131119678
Coord A exon
chr7:131120791-131120872
Coord C2 exon
chr7:131121069-131121628
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCACTCATTTTCAGACC
3' ss Score
10.31
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGCGTACGGGATGATACCTACCAATCCTACTCCTCGCCCTCACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACCTCCTCACGGTGCTACAGAGGCTGCGTAGTGAGATCTAAGAGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCG
Seq A exon
ACCCAGAATTGTCCTCCCAAAGCCAAGGCCCGAGTTCCCACTAAAACCCCCCCTAACTCTCTTGGTTGGGAAGACAACGGGG
Seq C2 exon
ACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCTGTAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=1.000 C2=0.145
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(23.7=64.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCTCACGGTGCTACAG
R:
GAGCTTGCTGGCTTCTTCACA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types