MmuEX0014850 @ mm9
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138262921-138265140:+
Coord C1 exon
chr7:138262921-138263192
Coord A exon
chr7:138264305-138264386
Coord C2 exon
chr7:138264583-138265140
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCACTCATTTTCAGACC
3' ss Score
10.31
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGCGTACGGGATGATACCTACCAATCCTACTCCTCGCCCTCACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACCTCCTCACGGTGCTACAGAGGCTGCGTAGTGAGATCTAAGAGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCG
Seq A exon
ACCCAGAATTGTCCTCCCAAAGCCAAGGCCCGAGTTCCCACTAAAACCCCCCCTAACTCTCTTGGTTGGGAAGACAACGGGG
Seq C2 exon
ACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCTGTAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=1.000 C2=0.145
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(23.7=64.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCTCACGGTGCTACAG
R:
GAGCTTGCTGGCTTCTTCACA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: