MmuEX0014967 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181641369-181643629:+
Coord C1 exon
chr1:181641369-181641487
Coord A exon
chr1:181642323-181642397
Coord C2 exon
chr1:181643542-181643629
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTAACAAATTATAGGAA
3' ss Score
5
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CCTCATCTTGTGAAATGTTTTGAAAACATCAGACGCATTCTACTGTGGAAACAGGACGTCGGCCCTCCCTCAGTGAAGATGCTCATCTCTGCCGAAGGGGAAGGCCTGGTGATGCCCAA
Seq A exon
GAAAATCCGTGTAAGAGCTTCTGTAGAACAGTGGATGGTAAATGTAGAGAAAAGCATGTTTGATGTGCTGAAGAA
Seq C2 exon
ATTTATAATTCAAGGTATTGAAGACTGGAAATACCATACTTTTTCCGACTGGGTCATGTCACATCCCGGGCAAGTGGTCATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'27-30,'27-29,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.4=100)
A:
PF083938=DHC_N2=FE(6.1=100)
C2:
PF083938=DHC_N2=PD(2.4=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGACGCATTCTACTGTGG
R:
CTTGCCCGGGATGTGACATG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types