RnoEX0001846 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:99942916-99956184:+
Coord C1 exon
chr13:99942916-99943016
Coord A exon
chr13:99943626-99943700
Coord C2 exon
chr13:99956084-99956184
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTAACAAATTACAGGAA
3' ss Score
5.46
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TTTGAAAATGTAAGACACGTGCTACTGTGGAAACAGGGCATCGGCCCTCCCTCTGTGAAGATGCTCATCTCTGCTGAAGGGGAAGGCCTGGTGCTGCCCAA
Seq A exon
GAAAATCCGTGTAAGAGCCGCTATAGAACAGTGGATGGTAAATGTAGAAAAAAGCATGTTCGATGTGCTAAAGAA
Seq C2 exon
ATTTATAACTCAAGGTATTGAAGACTGGAAATTTCATACTTTTTCTGACTGGGTCATGTCACATCCAGGGCAAGTGGTCCTCACTGTGGTGAGTTCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCTACTGTGGAAACAGG
R:
GAGGACCACTTGCCCTGGAT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]