MmuEX0014981 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69532369-69544556:-
Coord C1 exon
chr11:69544377-69544556
Coord A exon
chr11:69539398-69539564
Coord C2 exon
chr11:69532369-69532427
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTCCATCTTCGCAGTGC
3' ss Score
8.41
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCTAGCAAAGCCGAGAAGAAGCGAAAAGTGGCTGGCCGGGGAGGCGCCCGGGCAGGCCGAGTTGTCCGAGCTCCTCAGTCCACTGCAGGCCCAGGAGCTACAGAGGCTTCCCTGCTCCCTGATGGTCAGGAGCCAGAGCCCGAGTCTGGCAAGGAGGACTCTG
Seq A exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
Seq C2 exon
AGCTAGAACCGGAGAAATCTGAGAAACCTACAGAACTCGGCACTTCTCTGATGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237_MULTIEX5-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.232 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAAGATGGCTAGCAAA
R:
CATGTCCATCAGAGAAGTGCCG
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types