MmuEX0014981 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69345829-69358058:-
Coord C1 exon
chr11:69357879-69358058
Coord A exon
chr11:69352900-69353066
Coord C2 exon
chr11:69345829-69345929
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTCCATCTTCGCAGTGC
3' ss Score
8.41
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCTAGCAAAGCCGAGAAGAAGCGAAAAGTGGCTGGCCGGGGAGGCGCCCGGGCAGGCCGAGTTGTCCGAGCTCCTCAGTCCACTGCAGGCCCAGGAGCTACAGAGGCTTCCCTGCTCCCTGATGGTCAGGAGCCAGAGCCCGAGTCTGGCAAGGAGGACTCTG
Seq A exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
Seq C2 exon
AGCTAGAACCGGAGAAATCTGAGAAACCTACAGAACTCGGCACTTCTCTGATGGACATGGTAGGTTTGCATTTCCCCCAGTGGTCACATCCTTTCCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'2-2,'2-1,3-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.232 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAAAGCCGAGAAGAAGCG
R:
GACCACTGGGGGAAATGCAAA
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: