MmuEX0014982 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69337676-69353066:-
Coord C1 exon
chr11:69352900-69353066
Coord A exon
chr11:69342885-69343055
Coord C2 exon
chr11:69337676-69337904
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCTGTTCTCCGCAGAAG
3' ss Score
11.84
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
Seq A exon
AAGCCCTTCTTCCTCTCACGAACGATGTTGACCGGACTGGCAGATGCCACGTGGACGGGGGAGCACGACATGGTTCTGGAGCACTTTGTCCAGGATCCTGCGGTGCCTGCCCTCACCATCTTCATTGACCCCGTCTTTGGGTTGAAGCTGGAGCTGGGCATGCCTGTGCAG
Seq C2 exon
ACGCAGAATCAGATTGTGTACTTCATTCGACAAGCCCCAGTTCCCATCACCCCAGAGAACTTCGAGGAGACTGTGCAGTATGGGACGGTGCGGGGTGCCTACATCCCGGCTTTGCTCCGGCTGCTCAGCGGTGTCTACGTCCCCCAGATTTTTATGAATAAGTCTTGGCCTGAGAGCATCCGGAATCATTTTGTTTCACACCTGCATAGGTTTTTGGCCTCTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'2-3,'2-2,3-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(17.2=35.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATTACAGGCATTTGC
R:
ACTGCACAGTCTCCTCGAAGT
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: