MmuEX0014982 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69524174-69539564:-
Coord C1 exon
chr11:69539398-69539564
Coord A exon
chr11:69529383-69529553
Coord C2 exon
chr11:69524174-69524402
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCTGTTCTCCGCAGAAG
3' ss Score
11.84
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGCTGGGATTACAGGCATTTGCCAGCTGGAGATTGACCCCAGCGCTTCATGGAGAGGCTAACACTCCACCAACTCTGCTGCATCCCCAGCCCCTGTTTCACAGACGTCTTACAACTTTGAATCTTATTCTGTCCTGTTCTAGAGCTGGAACTCGGGATCTTGCTCTG
Seq A exon
AAGCCCTTCTTCCTCTCACGAACGATGTTGACCGGACTGGCAGATGCCACGTGGACGGGGGAGCACGACATGGTTCTGGAGCACTTTGTCCAGGATCCTGCGGTGCCTGCCCTCACCATCTTCATTGACCCCGTCTTTGGGTTGAAGCTGGAGCTGGGCATGCCTGTGCAG
Seq C2 exon
ACGCAGAATCAGATTGTGTACTTCATTCGACAAGCCCCAGTTCCCATCACCCCAGAGAACTTCGAGGAGACTGTGCAGTATGGGACGGTGCGGGGTGCCTACATCCCGGCTTTGCTCCGGCTGCTCAGCGGTGTCTACGTCCCCCAGATTTTTATGAATAAGTCTTGGCCTGAGAGCATCCGGAATCATTTTGTTTCACACCTGCATAGGTTTTTGGCCTCTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'3-5,'3-3,5-5=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATTACAGGCATTTGC
R:
ACTGCACAGTCTCCTCGAAGT
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types