RnoEX6047995 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56127993-56139448:-
Coord C1 exon
chr10:56139393-56139448
Coord A exon
chr10:56136110-56136280
Coord C2 exon
chr10:56127993-56128221
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCTGTTCCCCGCAGAAG
3' ss Score
11.95
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCAAGATCTGGAGGAACCTGAAGAACCTAAAGAACCGGACCTTTCGACGGACGTG
Seq A exon
AAGCCCATCTTCCTCTCACGAGCTATGTTGACTGGACTGGCAGATTCGACATGGACGGCGGAGCATGATGCGGTTCTGGAACACTTTGCCCAGGATCCCTCGGTGCCTGTCCTCACCATCTTTGTTGACCCTGTCTTTGGGTTGAAGCTGGAGCTGGGTATGCCTGTGCAG
Seq C2 exon
ACCCAGAATCAGATTGTGTACTTCATTCGACAAGCACCAGTTCCCATCACCCCAGAGAACTTTGAGGAAACCGTGCAGTATGGGACAGTGCGGGGTGCCTACATCCCAGCGTTGCTACGGCTGCTCAGCGGTGTCTACGTCCCTCAGATTTTTATGAATAAGTCTTGGCCTGAGAGCATCCGAAATCATTTTGTTTCACACCTTCATAGGTTTTTGGCCTCTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACCGGACCTTTCGACG
R:
TGTCAGAGAGGCCAAAAACCT
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]