BtaEX6086844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28031906-28043351:+
Coord C1 exon
chr19:28031906-28031967
Coord A exon
chr19:28035273-28035443
Coord C2 exon
chr19:28043123-28043351
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTCTCATTCTGCAGAAG
3' ss Score
10.62
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGCCAGTATTGGAACAACCTGAAATACAGAAAGAAGAATTAGAGGAGCGTGAGGTAGATGTG
Seq A exon
AAGCCCCTCTTCCTGTCCCGGGCTGTACTGACAGGACTGGCGGACGCCACATGGACAGAGGAGCACAGCACTGTTCTGGAACACTTTGCCCAGGACCCTTCGGAACCCATCCTCACCATCTTCATCGACCCTTGTATGGGGCTGAAGCTAGACCTGGGAATGCCTGTGCAG
Seq C2 exon
ACCCAGAACCAGATTGTCTACTTTATTCGCCAAGCCCCGGTCCCCATCACTCCAGAGAACTTTGAGGAGACGGTGCAGTTTGGGACAGTGCGGGGTGCCTACATCCCAGCCCTGCTTCGGCTGCTCAGTGGCGTCTTTGCTCCTCAGATCTTTAAAAACACAACCTGGCCTGAGAGCATTCGAAATCATTTTGCTTCTCACCTGCACAGGTTCTTGGCCTGCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGCGTGAGGTAGATGT
R:
CTGTCAGGCAGGCCAAGAAC
Band lengths:
251-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]