MmuEX0014983 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69342885-69358058:-
Coord C1 exon
chr11:69357879-69358058
Coord A exon
chr11:69345871-69345929
Coord C2 exon
chr11:69342885-69343055
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGATGTTCTCCCCAGAGC
3' ss Score
9.09
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTTGCCTTCAAGATGGCTAGCAAAGCCGAGAAGAAGCGAAAAGTGGCTGGCCGGGGAGGCGCCCGGGCAGGCCGAGTTGTCCGAGCTCCTCAGTCCACTGCAGGCCCAGGAGCTACAGAGGCTTCCCTGCTCCCTGATGGTCAGGAGCCAGAGCCCGAGTCTGGCAAGGAGGACTCTG
Seq A exon
AGCTAGAACCGGAGAAATCTGAGAAACCTACAGAACTCGGCACTTCTCTGATGGACATG
Seq C2 exon
AAGCCCTTCTTCCTCTCACGAACGATGTTGACCGGACTGGCAGATGCCACGTGGACGGGGGAGCACGACATGGTTCTGGAGCACTTTGTCCAGGATCCTGCGGTGCCTGCCCTCACCATCTTCATTGACCCCGTCTTTGGGTTGAAGCTGGAGCTGGGCATGCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTCCGAGCTCCTCAGTC
R:
CCAGTCCGGTCAACATCGTTC
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: