MmuEX0015035 @ mm10
Exon Skipping
Gene
ENSMUSG00000041144 | Dnah7b
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46343734-46353045:+
Coord C1 exon
chr1:46343734-46343871
Coord A exon
chr1:46344783-46344862
Coord C2 exon
chr1:46352815-46353045
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTAATGTTTTGGTAGCAA
3' ss Score
3.01
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CACAAAAGCTACATCAACTACACAAAGACTTTGCCACTGATCCCAGCACCAGAAGTCTTTGGGATGAATGCCAATGCCGACATCACTAAGGACCAGTCGGAGACGCAGCTGCTGTTTGATAACATTCTCCTTACCCAG
Seq A exon
CAAATTAATCTAGATGCCACGAGTTCCCATGGAGGTTAAATAAACTAAGGACACCTAACTGTTCAGTCTGGAAGATGCAG
Seq C2 exon
TCTCAGTCATCAGGTTCTGGAACAAAGTCATCAGATGAAGTAGTAAATGAGGTTGCTGGAGATATCCTGAGTAAACTTCCAAACAACTTTGATGTTGAAGCTGCCATGAGGAGATACCCAACAACTTACACTCAGAGCATGAACACTGTCCTTGTCCAAGAGATGGGACGTTTCAATAAGTTGCTGATAACCATAAGAGAATCATGCATTAATATTCAAAAAGCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144_MULTIEX3-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.167 C2=0.091
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.4=100)
A:
PF0302810=Dynein_heavy=PD(2.3=76.9)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
ENSMUST00000069293fB1324
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGACATCACTAAGGACCA
R:
GGGTATCTCCTCATGGCAGCT
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types