MmuEX0015283 @ mm10
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32308471-32312342:-
Coord C1 exon
chr2:32312127-32312342
Coord A exon
chr2:32309893-32310027
Coord C2 exon
chr2:32308471-32309064
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAAGAGCTTTCTCCTTCCAGCCT
3' ss Score
5.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGATCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
CCTAGGAGCATGGCGACTAAATTCACCACAGGGCAAGCATGAGAATCGCGCTGGCAAAGCCAGGCTCTGACTGGTGACTTTAGACAACTTAAGAGCCTTTGCCTTTCTGCCAGCGCCTGAGGGCTCGCAGGCAAG
Seq C2 exon
CCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCCTACTCCTCGGAGACCTCCCTTACCAAGCCTGCCTGGACAGCTGTTCTGTGACTTGACAGTGGCTCCCCCGGCCCCAAAGCGTCCTATTCATCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGATGTGATGTTGGTGAAAACTTGTGCCCCTCTGTGGTATTGCTCCTGCGACATTCTATAAATATCTATAAATATACCTATATATACATATATATACATATATATGGCTGACACAGCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCTTGTGGTCCAACAAGGGAACGCTGTCATCCTGACAACCCCCCCTCCAGTGTACCACCTCCAGTGAGCCCCCCTGTCCTCCTGGCCTGTGAACAGCCATCCCCTTGGCCATCCCAACCCTGCAGCAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCCTGACCCCTTT
R:
ATGATGAATAGGACGCTTTGGGG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types