MmuEX0015714 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96592079-96608338:-
Coord C1 exon
chr16:96608036-96608338
Coord A exon
chr16:96597794-96597856
Coord C2 exon
chr16:96592079-96593414
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACAGATTTATTCTCTCGCAGTTC
3' ss Score
6.42
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACCGAGCAAGAAGCAGCATGGTCTCCACAGAAAGTGCCTCCTCTACCTACGAAGAACTGGCCAGGGCCTATGAACACGCCAAGATGGAAGAGCAGCTGAGGCATGCCAAGTTCACCATCACAGAGTGCTTCATATCCGATACGTCCTCCGAGCAGTTGACGGCAGGGACAAATGAGTACACGGACAGTCTGACCTCCAGTACCCCTTCAGAATCGGGGATCTGCAGATTCACTGCATCTCCCCCCAAACCTCAGGATGGAGGACGAGTGGTGAACATGGCGGTTCCAAAGGCCCATCGGCCAG
Seq A exon
TTCTAGAGACCAGAAGTTCAAAGTCAAGACACCAGCTGACACATGTTCCTCTGAGGGCTCTAG
Seq C2 exon
GCGACCTCATACACCTGCCTCCATACCTACGAATGGACTTCTTGTTAAACCGGGGCGCACCAGGCACCAGCAGGGACCTGAGTTTAGGACAAGCGTGCTTGGAACCCCAGAAAAGTCGGACCCTGAAACGCCCCACGGTCCTTGAGCCCACCCCTATGGAGGCCTCCTCCTCCACCTCTTCCACGCGAGAAGGACAGCAGTCGTGGCAACAAGGGGCTGTGGCCACCTTACCTCAGCGAGAGGGTGCAGAGCTGGGACAGGCAGCTAAAATGAGCAGCTCCCAAGAGTCACTGCTGGACTCCCGGGGCCATTTGAAAGGAAACAATCCCTACGCAAAATCTTACACCTTGGTATAACACATGGCACCTGATGGACAGCGGTTGTAAATACAATTTAAACGAGCCAATCAAAGCTACCTTTTTTTTACTGAATTCCGATATTTATAATTAAAGAAAATTGCCAAAATATATTAAAAAAAAAAGAAGAAAGAAAGAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=0.818 C2=0.822
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000056102fB1367
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCCCTTCAGAATCGGGG
R:
TCGTAGGTATGGAGGCAGGTG
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types