RnoEX0029940 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37004902-37020831:-
Coord C1 exon
chr11:37020529-37020831
Coord A exon
chr11:37010571-37010633
Coord C2 exon
chr11:37004902-37005257
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACAGATTTATTCTCTCGCAGTTC
3' ss Score
6.42
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACAGAGCAAGGAGCAGCATGGTCTCCACAGAAAGTGCCTCCTCTACCTACGAAGAACTGGCCAGGGCCTACGAGCACGCCAAGATGGAGGAGCAGCTGAGGCACGCCAAGTTCACCATCACAGAGTGCTTCATATCCGACACGTCCTCCGAGCAGCTGACGGCAGGGACAAACGAGTACACGGACAGTCTGACCTCCAGTACCCCTTCAGAATCGGGGATCTGCAGATTCACTGCGTCTCCCCCCAAACCTCAGGATGGAGGTCGTGTGGTGAACATGGCGGTTCCAAAGGCCCATCGGCCAG
Seq A exon
TTCTAGAGACCAGAAGTTCAAAGTCAAGACACCAGCTGACACATGTTCCTCTGAGGGCTCTAG
Seq C2 exon
GCGACCTCATACACCTGCCTCCATACCTGCGAATGGACTTCTTGTTAAACCGGGGCGCACCAGGCACCAGCAGGGACCTGAGCTTAGGACAAGCGTGCTTGGAACCCCAGAAAAGTCGGACCCTGAAGCGCCCCACGGTCCTTGAGCCCACCCCTATGGAGGCTTCCTCCTCCACCTCTTCCACGAGAGAAGGACAGCAGTCGTGGCAACAAGGGGCCGTGGCCACCTTACCTCAGCGAGAGGGTGCAGAGCTGGGACAGGCAGCTAAAATGAGCAGCTCCCAAGAGTCGCTGCTGGACTCTCGGGGCCACTTGAAAGGAAACAATCCCTACGCAAAATCCTACACCTTGGTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=0.818 C2=0.831
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000002215fB4492
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGTCGTGTGGTGAAC
R:
TGTCCTAAGCTCAGGTCCCTG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]