MmuEX0015717 @ mm9
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45235533-45256065:+
Coord C1 exon
chr9:45235533-45235729
Coord A exon
chr9:45253736-45253859
Coord C2 exon
chr9:45255748-45256065
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTTTTCCAGCACAGCTG
3' ss Score
4.01
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
ACAACAAGCCACCTACCCAAAAGCTGGCCCAACCACCGGGGACGGCTGCACAGCAAAGAGCAAGCAACTGCTAGGGTCTGGAGACCTGAATTCTTCAAGTCTGGTGATCCTGTGTGAGCCTCAATTTCCTAGCCAGTTTTAAAGGAGCCTGATGAAACTTTCATAGACTTTATGGGAGTTACACAGAGTAATCGCAG
Seq A exon
CTGCTAATGGCTTCATCACGGCTTTTTATGAGATGATGTGAATTGCTCTGGCCAATGAGGCTTAATGGCCTTCCTCAACGACCTGCCTGGTATATTCTCCCTAGAGGCTCTGCTCCGAGTTAAG
Seq C2 exon
CCCGCCCCGAGGATGTCGGCACCAGCCTCTACTTTGTAAATGACTCCCTGCAGCACGTGACCTTCTCCAGTTCTGTGGGTGTGGTGGTGCCCTGCCCGGCAGCTGGATCCCCCAGTGCGGCTCTCCGATGGTACCTGGCCACGGGGGACGACATCTACGATGTGCCACACATCCGGCACGTGCATGCCAACGGGACTCTGCAGCTCTTCCCTTTCTCCCCCTCCGCCTTCAATAGCTTTATCCACGACAATGACTATTTCTGCACTGCAGAGAACGCAGCCGGCAAGATCCGGAGCCCTAACATTCGCATCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139271=Ig_3=WD(100=74.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCACCTACCCAAAAGC
R:
CGTGCTGCAGGGAGTCATTTA
Band lengths:
251-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: