MmuEX0015717 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45427450-45447982:+
Coord C1 exon
chr9:45427450-45427646
Coord A exon
chr9:45445648-45445776
Coord C2 exon
chr9:45447665-45447982
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCACGATGTTTTTTTTCCAGCAC
3' ss Score
7.92
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
ACAACAAGCCACCTACCCAAAAGCTGGCCCAACCACCGGGGACGGCTGCACAGCAAAGAGCAAGCAACTGCTAGGGTCTGGAGACCTGAATTCTTCAAGTCTGGTGATCCTGTGTGAGCCTCAATTTCCTAGCCAGTTTTAAAGGAGCCTGATGAAACTTTCATAGACTTTATGGGAGTTACACAGAGTAATCGCAG
Seq A exon
CACAGCTGCTAATGGCTTCATCACGGCTTTTTATGAGATGATGTGAATTGCTCTGGCCAATGAGGCTTAATGGCCTTCCTCAACGACCTGCCTGGTATATTCTCCCTAGAGGCTCTGCTCCGAGTTAAG
Seq C2 exon
CCCGCCCCGAGGATGTCGGCACCAGCCTCTACTTTGTAAATGACTCCCTGCAGCACGTGACCTTCTCCAGTTCTGTGGGTGTGGTGGTGCCCTGCCCGGCAGCTGGATCCCCCAGTGCGGCTCTCCGATGGTACCTGGCCACGGGGGACGACATCTACGATGTGCCACACATCCGGCACGTGCATGCCAACGGGACTCTGCAGCTCTTCCCTTTCTCCCCCTCCGCCTTCAATAGCTTTATCCACGACAATGACTATTTCTGCACTGCAGAGAACGCAGCCGGCAAGATCCGGAGCCCTAACATTCGCATCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCACCTACCCAAAAGC
R:
CGTGCTGCAGGGAGTCATTTA
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types