MmuEX1008975 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45427450-45432993:+
Coord C1 exon
chr9:45427450-45427646
Coord A exon
chr9:45430300-45430512
Coord C2 exon
chr9:45432893-45432993
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCCAGCCCCGTGGATGACAGGAG
3' ss Score
1.95
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACAACAAGCCACCTACCCAAAAGCTGGCCCAACCACCGGGGACGGCTGCACAGCAAAGAGCAAGCAACTGCTAGGGTCTGGAGACCTGAATTCTTCAAGTCTGGTGATCCTGTGTGAGCCTCAATTTCCTAGCCAGTTTTAAAGGAGCCTGATGAAACTTTCATAGACTTTATGGGAGTTACACAGAGTAATCGCAG
Seq A exon
GAGCCGGGGAGCCGAGGAGGGAGGAGCCGCCGCCGCGCGCTGGGCTGAGGAGCAGAGAGAGCGGGGCGCCGAGTGCGGGCGGCTGGGAGCGCGCTGAGCGGGGGAGAGGCGCTGCCGCACGGCCGGCCACAGGACCACCTCCCCGGAGAATAGGGCCTCTTTATGGCATGTGGCTGGTAACTTTCCTCCTGCTCCTGGACTCTTTACACAAAG
Seq C2 exon
TCACCCCCGCGGCACCAAGGAAAATGTAAATGCGAATGTTCCAGCCTGTTACAGAAAACAATATCCTCTTGCAATAATTTGTACGTCCATCTGTGAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-'2-8,'2-7,3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.662 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCACCTACCCAAAAGC
R:
GCTCCTCACAGATGGACGTAC
Band lengths:
295-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types