MmuEX0017048 @ mm10
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6486289-6489824:-
Coord C1 exon
chr18:6489724-6489824
Coord A exon
chr18:6489213-6489330
Coord C2 exon
chr18:6486289-6486389
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGCATACGTTGGTTTCCAGGTA
3' ss Score
6.98
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CTCCGGGTATATTCTTGCTTCCACCCGCAGTGCTGGTGGGAAGAAAAAAACCTGTCTCCTACTTTTTTGATCTTTGAGACAATGTTGCAGATTTGTTTACA
Seq A exon
GTACAGCCACTTATACAGGGTGCAGTGTGTTGACAGTTGAAGGAAGTCGAGGATTCCCATGGACTGTGTGCTCCAGTTTTGTTGTGGAAAATTGTACTGTAATACTTCTGTTGGCACT
Seq C2 exon
TCTTGCAACTGAAGTGAAGTGCATTGTCGCAGAAGCAGAGTTAAAGAAACTTCAGATAGTTTGGATTAGGAAGAAATTGAGAAGATCTGGGCATTCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.100 C2=NA
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(19.0=23.9)
A:
PF105134=EPL1=PD(13.0=63.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGGTATATTCTTGCTTCCAC
R:
ATGCAGAATGCCCAGATCTTCT
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types