MmuEX0017048 @ mm9
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6462830-6490854:-
Coord C1 exon
chr18:6490461-6490854
Coord A exon
chr18:6489158-6489328
Coord C2 exon
chr18:6462830-6462989
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTGCATACGTTGGTTTCCAGGTA
3' ss Score
6.98
5' ss Seq
TGCTTGGGT
5' ss Score
-8.59
Exon sequences
Seq C1 exon
CAGTGGAGTTTTAATGTCCGCCATGTTGGCCATGGCGTATTGAAGAGAGCGAGTGAGCGAGGCGCGGAGCGGCACAGCCTCCCACCCTCCCGGCTGGTGTCAGGGCCCGGACGGCGGGCTTTGCGCTCCGCCCCCAAGTCCCCGGCAGCGGCAGGCGAGTGGAGACCGAAACTCCGGTTCTCCATGATCCCGCTGGCCGGGGCCGTTTCCCCAGAGCGGAGAGGTATCTGCTGCGCCTGAGATGAGTAAACTGTCGTTTCGGGCGCGGGCGCTGGACGCCTCGAAGCCGCTGCCGGTCTTCCGCTGTGAGGATCTGCCCGACCTGCACGAATACGCCTCGATAAACCGGGCCGTGCCGCAGATGCCCACCGGGATGGAGAAGGAAGAGGAGTCG
Seq A exon
GTACAGCCACTTATACAGGGTGCAGTGTGTTGACAGTTGAAGGAAGTCGAGGATTCCCATGGACTGTGTGCTCCAGTTTTGTTGTGGAAAATTGTACTGTAATACTTCTGTTGGCACTGTAAGAATTTCTATTCTCTGTAATGTTTTTCAAAATAAAACTCTTCAAACTGC
Seq C2 exon
GAACACCATCTTCAGCGGGCTATTTCTGCACAGCAGGTGTACGGCGAGAAGCGGGATAACATGGTTATTCCAGTTCCTGAAGCAGAGAGTAACATCGCTTACTATGAGTCCATATACCCTGGGGAGTTCAGGATGCCAAAGCAGCTCATTCACATACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-'1-2,'1-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.100 C2=0.179
Domain overlap (PFAM):
C1:
PF105134=EPL1=PU(31.2=88.2)
A:
PF105134=EPL1=PD(13.0=63.6)
C2:
PF105134=EPL1=FE(36.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAACTCCGGTTCTCCATG
R:
GCAGAAATAGCCCGCTGAAGA
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: