MmuEX0017492 @ mm9
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108279089-108298187:-
Coord C1 exon
chr5:108297810-108298187
Coord A exon
chr5:108297257-108297407
Coord C2 exon
chr5:108279089-108279323
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTTAGGTCTTTTCACCAAAGAGC
3' ss Score
2.04
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
Exon sequences
Seq C1 exon
AATCCCTTCGGCTTCTGCTTCGGCTTCGCCAGCGCGGCCGGGGCCCTAACCTGCTCGAACCCATTATGCCGTAGAGGCCGGCCGGGGCTCTTTAAGGCCCTCGCCGCGCCTGCGCCCTGGGCTTTCGTGAAGCGGCCCGACCAGAGCCGGGCGGAGCTGGCGGGCGTGGGGCTGCGCGGGGTTCTCCCGAGTCGTCGGCGGTACGGTGGAGGGTCGCGGGCAGCTCCGGGTTCCTGAGCAGGAGGCGTGCGCCGGGTCACGCGGGGAACGCGGCCGCGGAGGCCGAGCCGGGCCGAGGCGCTTGGAGGCGGCGGCGGCACGGCCGCCGGCTGCATGGGAAGTTCATGTTGACGGCGGAGTCCACCCCAGGTTTCCAAG
Seq A exon
AGCGAAGCAAAAGTTCTGGACCGGTTCCCTCGCAGTCCCGTTTCTGCTGGAGGGGATTTTGAAGAGCAACAAGCGGTTTTCTTTGGAGAATAATAAACCTTTCTCCGCCGAGAGAATGAATTCCAGAGCTTCCTGAAGTTAGAGAAACATG
Seq C2 exon
GTTATATAAACAGTAAGAACTGCTGAGGAGAACAGACTAGCCTGCTGCCTGGAAGAGACTCAGACCTGCCTGAAGGAGAGATTCTCTGTCCTGTTGAGCTCTCCACAAGTAGTGTAATGAACTCCAGGGTTCCTGCTCTTGGTGATGTAGCTATATTTGAGTTGACCCTGCCCCTGCCCTTGCCCTTTTACTTATATTCTTGTGAATAACTCTAATAAACTCATTGGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'3-7,'3-6,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCATGGGAAGTTCATGT
R:
AAGTAAAAGGGCAAGGGCAGG
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: