MmuEX0017903 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74067286-74069249:+
Coord C1 exon
chr8:74067286-74067382
Coord A exon
chr8:74067856-74068022
Coord C2 exon
chr8:74069123-74069249
Length
167 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTTTTCCTTTCCAGGCT
3' ss Score
11.29
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
Seq A exon
GCTCTTGCACTGCGAGTCCACCTGGAACTGGCTTCCCCTGTTCTCTGCATAGCTCAGCCTCCCCTCTCCCTTCTCCCCTGCCTGACCCAGCTGCCCGCCTCCCCGATGGTGCTTGGTTCTCTCGGTGTCTTTAGTGACCGCTGGCAGGCTGCCGTGCAGAGGGTCAG
Seq C2 exon
AGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAAGCTGATGCCCCTGGGGACAGCTGACGTGGTTGTGAGTGACGTGAAGCTGAGTGGGAAGACTAAGACCGTGCCTGGATACCTGCGTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.424 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=PD(4.4=8.9)
C2:
PF102404=DUF2464=FE(16.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
CACGCAGGTATCCAGGCAC
Band lengths:
219-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types