MmuEX6036330 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74067286-74069565:+
Coord C1 exon
chr8:74067286-74067382
Coord A exon
chr8:74069123-74069249
Coord C2 exon
chr8:74069446-74069565
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCCCCCACTCCCAGAGG
3' ss Score
9.07
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
Seq A exon
AGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAAGCTGATGCCCCTGGGGACAGCTGACGTGGTTGTGAGTGACGTGAAGCTGAGTGGGAAGACTAAGACCGTGCCTGGATACCTGCGTGTGGG
Seq C2 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAGGCCGGTGCCCAAGCCCCGCACGCTCAGCCAGGACATGCGAGGCCTCTCCCTGGACCCACCCAAAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'3-6,'3-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.000 C2=0.585
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(16.7=100)
C2:
PF102404=DUF2464=FE(15.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
CTCTTTGGGTGGGTCCAGGG
Band lengths:
211-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: