MmuEX6036330 @ mm10
Exon Skipping
Gene
ENSMUSG00000031813 | Mvb12a
Description
multivesicular body subunit 12A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:71543387-71545576:+
Coord C1 exon
chr8:71543387-71543483
Coord A exon
chr8:71545224-71545350
Coord C2 exon
chr8:71545547-71545576
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCCCCCACTCCCAGAGG
3' ss Score
9.07
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
Seq A exon
AGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAAGCTGATGCCCCTGGGGACAGCTGACGTGGTTGTGAGTGACGTGAAGCTGAGTGGGAAGACTAAGACCGTGCCTGGATACCTGCGTGTGGG
Seq C2 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'3-9,'3-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.000 C2=0.585
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(16.7=100)
C2:
PF102404=DUF2464=FE(15.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
TTGCACCAGATGGCAAAGC
Band lengths:
126-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types