DreEX0048097 @ danRer10
Exon Skipping
Gene
ENSDARG00000091619 | mvb12ba
Description
multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
Coordinates
chr5:4691080-4697643:-
Coord C1 exon
chr5:4697547-4697643
Coord A exon
chr5:4693736-4693865
Coord C2 exon
chr5:4691080-4691229
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTGTGTATCTGCAGAAG
3' ss Score
8.9
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AGTCATTTAGGAAACGTGCTTGTAGACATGAAGCTCATCGACATCAAGGACACGCTGCCTGTGGGATTCATTCCCATTCAGGAAACCGTGGACACAC
Seq A exon
AAGAGCCGGCGTTCAGGAAGAGGAGGTTATGCATTAAGTTCATCCCGAGAGACTCCACTGAAGCCGCCATCTGTGACATCCGCATTTTAGGACGCTCGAAACAGGCTCCACCACAGTACACCTTCATAGG
Seq C2 exon
AGAGCTGAACAATATGGGCATCTGGTACCGCATGGGGAAAGTGCCACGGACCCAAGACTCTTCACCTGTACAGAACAACTCCAGCAACAACACCACCAATAACATCCAGACGCTCACCAACAACTCCACTCCAGCGCCAGTCTTGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091619-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.601
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.3=100)
A:
PF102404=DUF2464=FE(16.5=100)
C2:
PF102404=DUF2464=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATTTAGGAAACGTGCTTGT
R:
CAAGACTGGCGCTGGAGTG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]